Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5192

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13559 and 13560 are separated by 121 nucleotides13560 and 13561 are separated by 458 nucleotides mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116,613 to 117,622 13559 mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117,744 to 118,664 13560 mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119,123 to 121,882 13561

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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116,814 + 13559 mRNA_5191 0.20 -1.5
116,933 - 13559 mRNA_5191 0.32 -0.7
116,985 - 13559 mRNA_5191 0.37 -2.1
117,106 + 13559 mRNA_5191 0.49 -0.8
117,132 - 13559 mRNA_5191 0.51 -1.3
117,279 + 13559 mRNA_5191 0.66 -0.1
117,688 - +0.1
117,707 - -3.1
117,709 - -1.1
117,858 - 13560 mRNA_5192 0.12 +1.1
117,859 + 13560 mRNA_5192 0.12 +1.3
118,165 + 13560 mRNA_5192 0.46 -0.6
118,169 + 13560 mRNA_5192 0.46 -1.5
118,730 + -0.6
118,734 - -0.3

Or see this region's nucleotide sequence