Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5227

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13594 and 13595 are separated by 168 nucleotides13595 and 13596 are separated by 370 nucleotides mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196,713 to 201,520 13594 mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201,689 to 202,738 13595 mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203,109 to 206,278 13596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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201,036 + 13594 mRNA_5226 0.90 -0.2
201,117 + +0.6
201,156 - -1.6
201,311 + -1.4
201,315 - +0.1
201,327 + -1.8
201,430 - -2.3
201,455 + -0.4
201,468 - -0.5
201,594 - -3.1
201,617 + -2.0
201,636 + +0.2
201,912 - 13595 mRNA_5227 0.21 +1.3
202,754 + -0.9
203,081 + -0.9
203,087 + +3.3
203,163 - -0.4
203,200 + -0.8
203,215 - -0.6
203,309 + -1.7
203,492 - 13596 mRNA_5228 0.12 -3.3
203,678 - 13596 mRNA_5228 0.18 -1.3

Or see this region's nucleotide sequence