Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5269

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13636 and 13637 are separated by 605 nucleotides mRNA_5268: 13636 - K10389 TUBG tubulin gamma, at 319,582 to 321,853 13636 mRNA_5269: 13637 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 322,459 to 324,944 13637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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321,861 - -0.6
322,020 + +0.4
322,172 + -1.4
322,177 + -0.7
322,208 - -1.8
322,212 - -2.4
322,213 - -0.3
322,217 - -1.1
322,221 + +0.4
322,221 + +0.1
322,222 + +0.0
322,222 - -2.7
322,222 + -1.1
322,232 + -1.4
322,243 + -2.5
322,254 + -3.8
322,361 - -1.5
322,377 - -1.4
322,407 + -2.1
322,525 - +0.2
322,533 - -0.3
322,656 + -1.8
322,836 + 13637 mRNA_5269 0.15 -1.7
322,980 + 13637 mRNA_5269 0.21 -1.9
322,992 - 13637 mRNA_5269 0.21 -3.7
323,003 - 13637 mRNA_5269 0.22 -2.6
323,010 + 13637 mRNA_5269 0.22 -0.4
323,120 + 13637 mRNA_5269 0.27 -2.7
323,417 + 13637 mRNA_5269 0.39 -1.0
323,429 + 13637 mRNA_5269 0.39 -0.5
323,559 + 13637 mRNA_5269 0.44 -1.8
323,688 + 13637 mRNA_5269 0.49 -0.4
324,146 - 13637 mRNA_5269 0.68 -3.4
324,749 + -0.8
325,073 + +0.4
325,359 + -0.3
325,477 - -0.9
325,479 - -0.5
325,490 - -1.3
325,506 + +0.4
325,543 + -0.5
325,768 + -2.2

Or see this region's nucleotide sequence