Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5339

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13706 and 13707 are separated by 153 nucleotides13707 and 13708 are separated by 178 nucleotides mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488,482 to 491,424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491,578 to 492,823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493,002 to 494,592 13708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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490,740 - 13706 mRNA_5338 0.77 -0.1
490,925 + 13706 mRNA_5338 0.83 -0.6
492,907 + -1.1
492,917 - -1.9
492,949 + -0.4
493,042 - -3.6
493,193 - 13708 mRNA_5340 0.12 -2.6
493,198 + 13708 mRNA_5340 0.12 +0.2
493,208 + 13708 mRNA_5340 0.13 -0.9
493,317 - 13708 mRNA_5340 0.20 -1.3
493,505 - 13708 mRNA_5340 0.32 -1.2
493,601 - 13708 mRNA_5340 0.38 -0.2
493,739 - 13708 mRNA_5340 0.46 -0.7

Or see this region's nucleotide sequence