Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5385

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13753 and 13754 are separated by 38 nucleotides mRNA_5385: 13753 - Hypothetical Protein, at 619,262 to 620,433 13753 mRNA_5386: 13754 - Hypothetical Protein, at 620,472 to 621,845 13754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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618,842 - -1.9
618,871 - -0.1
619,006 + -1.7
619,022 + -0.8
619,024 + +0.5
619,041 + -1.0
619,139 - +0.3
619,154 - +2.2
619,170 - -1.0
619,179 + -1.1
619,183 + -3.9
619,188 + -0.6
619,330 + -0.9
619,432 + 13753 mRNA_5385 0.15 -0.1
619,448 - 13753 mRNA_5385 0.16 -3.6
619,464 - 13753 mRNA_5385 0.17 +0.3
619,474 - 13753 mRNA_5385 0.18 -0.7
619,503 + 13753 mRNA_5385 0.21 -0.4
619,905 + 13753 mRNA_5385 0.55 -2.4
619,908 - 13753 mRNA_5385 0.55 -4.2
619,912 - 13753 mRNA_5385 0.55 -2.3
619,934 - 13753 mRNA_5385 0.57 +0.9
620,082 - 13753 mRNA_5385 0.70 -1.4
620,085 + 13753 mRNA_5385 0.70 -1.0
620,085 + 13753 mRNA_5385 0.70 -1.7
620,913 - 13754 mRNA_5386 0.32 -0.8
621,001 - 13754 mRNA_5386 0.39 -0.5
621,264 + 13754 mRNA_5386 0.58 +0.6

Or see this region's nucleotide sequence