Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5391

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13758 and 13759 are separated by 344 nucleotides mRNA_5390: 13758 - K03065 PSMC3, RPT5 26S proteasome regulatory subunit T5, at 631,553 to 634,043 13758 mRNA_5391: 13759 - HMMPfam-ATP synthase j chain-PF04911, at 634,388 to 634,888 13759

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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634,081 - -0.5
634,098 + -1.7
634,151 + -1.4
634,173 + -2.3
634,893 + -0.9
634,911 + +0.9
635,210 + -1.7
635,350 - -0.5
635,449 + -3.6
635,513 - -1.8
635,538 + +1.0
635,630 + +1.2
635,664 + +0.4
635,844 + -3.2

Or see this region's nucleotide sequence