Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + -0.9
1 + -0.6
1 + +2.4
1 + -1.1
23 + -0.3
29 + -0.5
29 + -1.7
34 + -2.1
39 + -2.2
39 + +0.1
47 + -0.8
50 + +0.2
50 + -0.7
50 + -1.5
50 + -3.2
50 - -1.9
51 + -0.8
61 + -0.8
62 + -1.5
96 + -0.6
116 + -1.3
158 - -3.2
159 - -2.0
160 - +0.1
169 - +0.7
180 - -3.4
189 + -1.0
198 + +0.2
201 - -2.4
208 - -1.6
210 + +0.7
225 + 13762 mRNA_5394 0.11 -1.9
225 + 13762 mRNA_5394 0.11 +0.1
244 + 13762 mRNA_5394 0.13 +0.6
245 - 13762 mRNA_5394 0.13 -2.8
271 - 13762 mRNA_5394 0.16 -2.2
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 +0.1
280 - 13762 mRNA_5394 0.17 -0.5
306 + 13762 mRNA_5394 0.19 +0.8
317 - 13762 mRNA_5394 0.21 -0.5
345 + 13762 mRNA_5394 0.23 -1.8
345 - 13762 mRNA_5394 0.23 -2.7
347 + 13762 mRNA_5394 0.24 -1.0
359 - 13762 mRNA_5394 0.25 -1.8
387 - 13762 mRNA_5394 0.28 -1.8
399 + 13762 mRNA_5394 0.29 +0.0
434 + 13762 mRNA_5394 0.33 -0.5
447 - 13762 mRNA_5394 0.34 -2.6
485 - 13762 mRNA_5394 0.38 +0.9
543 + 13762 mRNA_5394 0.44 -2.2
649 + 13762 mRNA_5394 0.55 -1.0
667 + 13762 mRNA_5394 0.57 -2.8
667 - 13762 mRNA_5394 0.57 -1.5
678 - 13762 mRNA_5394 0.58 +0.0
718 + 13762 mRNA_5394 0.63 -2.9
723 + 13762 mRNA_5394 0.63 -3.2
802 + 13762 mRNA_5394 0.71 -1.4
806 + 13762 mRNA_5394 0.72 -1.6
905 - 13762 mRNA_5394 0.82 -0.8
911 + 13762 mRNA_5394 0.83 -2.1
965 + 13762 mRNA_5394 0.88 -0.7
966 + 13762 mRNA_5394 0.89 -2.0
968 + 13762 mRNA_5394 0.89 -2.3
1,014 - -3.4
1,084 - -0.6
1,103 - -2.0
1,110 + -0.6
1,245 - 13763 mRNA_5395 0.11 -0.9
1,260 - 13763 mRNA_5395 0.13 -1.2
1,376 - 13763 mRNA_5395 0.27 -3.5
1,438 + 13763 mRNA_5395 0.34 +0.1
1,438 + 13763 mRNA_5395 0.34 -0.4
1,438 + 13763 mRNA_5395 0.34 -3.1
1,523 + 13763 mRNA_5395 0.44 -1.4
1,528 - 13763 mRNA_5395 0.45 -0.7
1,533 + 13763 mRNA_5395 0.45 -1.4
1,538 + 13763 mRNA_5395 0.46 +0.4
1,538 - 13763 mRNA_5395 0.46 -1.2
1,556 + 13763 mRNA_5395 0.48 -0.6
1,639 + 13763 mRNA_5395 0.58 -1.1
1,854 - 13763 mRNA_5395 0.83 -1.8
1,855 - 13763 mRNA_5395 0.83 -1.2
1,887 - 13763 mRNA_5395 0.87 -2.4
1,908 - 13763 mRNA_5395 0.89 -2.7
2,000 - -1.5
2,009 + -1.5

Or see this region's nucleotide sequence