Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5406

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13773 and 13774 are separated by 145 nucleotides13774 and 13775 are separated by 91 nucleotides mRNA_5405: 13773 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 23,970 to 26,723 13773 mRNA_5406: 13774 - KOG2742 Predicted oxidoreductase, at 26,869 to 28,382 13774 mRNA_5407: 13775 - K15734 SDR16C5 all-trans-retinol dehydrogenase (NAD+), at 28,474 to 30,165 13775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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25,991 - 13773 mRNA_5405 0.73 -1.0
26,132 + 13773 mRNA_5405 0.79 -1.4
26,186 + 13773 mRNA_5405 0.80 -0.4
26,685 - -2.1
26,817 + -2.2
26,857 + -0.4
26,985 - -2.0
26,990 - +0.4
27,099 - 13774 mRNA_5406 0.15 -0.1
27,138 - 13774 mRNA_5406 0.18 -1.9
27,140 - 13774 mRNA_5406 0.18 -3.4
27,155 + 13774 mRNA_5406 0.19 -0.8
27,155 + 13774 mRNA_5406 0.19 -0.7
27,174 - 13774 mRNA_5406 0.20 -2.8
27,213 + 13774 mRNA_5406 0.23 -1.9
27,260 + 13774 mRNA_5406 0.26 -3.5
27,263 + 13774 mRNA_5406 0.26 -2.4
27,529 + 13774 mRNA_5406 0.44 -0.9
27,545 + 13774 mRNA_5406 0.45 -1.9
27,572 + 13774 mRNA_5406 0.46 -1.3
27,590 - 13774 mRNA_5406 0.48 +0.0
27,698 + 13774 mRNA_5406 0.55 -0.8
27,704 - 13774 mRNA_5406 0.55 -3.4
27,705 + 13774 mRNA_5406 0.55 -0.9
27,721 + 13774 mRNA_5406 0.56 -0.5
27,743 - 13774 mRNA_5406 0.58 -1.6
27,919 - 13774 mRNA_5406 0.69 +0.1
27,920 + 13774 mRNA_5406 0.69 +0.6
28,071 - 13774 mRNA_5406 0.79 -4.1
28,081 + 13774 mRNA_5406 0.80 -0.5
28,183 + 13774 mRNA_5406 0.87 -0.8
28,309 + -1.5
28,359 - +0.2
28,529 - -1.5

Or see this region's nucleotide sequence