Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5457

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13825 and 13826 are separated by 753 nucleotides mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132,935 to 135,021 13825 mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466 13826

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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132,179 + -0.6
132,570 + -0.7
132,681 + +0.2
132,729 + -1.8
132,731 - -2.3
132,974 + -1.7
133,257 + 13825 mRNA_5457 0.15 -0.4
133,276 + 13825 mRNA_5457 0.16 -3.1
133,406 - 13825 mRNA_5457 0.23 -4.4
133,629 - 13825 mRNA_5457 0.33 -0.2
133,862 - 13825 mRNA_5457 0.44 -3.5
134,425 + 13825 mRNA_5457 0.71 -2.0
134,559 + 13825 mRNA_5457 0.78 -1.3
134,692 - 13825 mRNA_5457 0.84 -0.3
134,700 + 13825 mRNA_5457 0.85 +0.6
134,846 + -3.2
134,958 - +1.7
134,994 - -1.3
134,994 + -3.3
135,005 - -2.2
135,112 - -1.2
135,133 - -1.0
135,133 - -3.1
135,142 + -1.2
135,152 - -0.8
135,155 + -2.7
135,160 + -0.2
135,165 + -1.4
135,192 - -1.4
135,210 + -1.9
135,228 - +0.2
135,238 - -0.2
135,271 - -2.3
135,284 + -0.5
135,285 - -2.6
135,287 + -0.8
135,290 - -1.2
135,299 - -1.2
135,310 - -1.7
135,319 + -1.2
135,319 + +0.2
135,327 - -2.7
135,354 - -2.0
135,446 - -2.0
135,446 - -2.3
135,464 + +0.8
135,464 + -1.7
135,485 - +0.4
135,486 - -2.0
135,486 - -3.2
135,489 + -2.2
135,493 + -1.8
135,506 + +0.4
135,510 + -0.3
135,511 + -1.3
135,560 - -2.3
135,560 - -0.9
135,570 + -0.9
135,571 - -1.4
135,577 - -2.6
135,580 + -1.2
135,581 + +0.0
135,586 + -3.9
135,586 - -1.3
135,607 - -1.1
135,616 + -2.4
135,627 + -0.8
135,632 - -2.9
135,647 - -1.1
135,654 + -0.9
135,656 + +0.8
135,682 - +1.8
135,688 + -1.8
135,724 + -2.3
135,728 + -1.7
135,818 - -0.2
135,825 - -1.2
135,864 - -0.4
135,929 - -2.8
135,944 - -2.2
135,985 + 13826 mRNA_5458 0.12 -2.5
135,990 - 13826 mRNA_5458 0.13 -1.3

Or see this region's nucleotide sequence