Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5462

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13829 and 13830 are separated by 331 nucleotides13830 and 13831 are separated by 550 nucleotides mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144,867 to 148,106 13829 mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148,438 to 149,863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150,414 to 154,047 13831

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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147,492 - 13829 mRNA_5461 0.81 -3.2
147,583 - 13829 mRNA_5461 0.84 -0.9
147,634 - 13829 mRNA_5461 0.85 -1.0
148,363 + -1.6
148,466 + -0.3
148,498 + +0.1
148,568 - -0.3
148,583 - 13830 mRNA_5462 0.10 -1.0
148,631 + 13830 mRNA_5462 0.14 -0.1
148,702 + 13830 mRNA_5462 0.19 +0.2
148,711 - 13830 mRNA_5462 0.19 -0.8
148,783 + 13830 mRNA_5462 0.24 +0.9
148,815 + 13830 mRNA_5462 0.26 -3.1
148,939 - 13830 mRNA_5462 0.35 -1.4
149,331 - 13830 mRNA_5462 0.63 +0.7
149,447 + 13830 mRNA_5462 0.71 +0.5
149,450 - 13830 mRNA_5462 0.71 +0.4
149,498 - 13830 mRNA_5462 0.74 -0.5
149,572 + 13830 mRNA_5462 0.80 -1.4
149,680 + 13830 mRNA_5462 0.87 -0.9
149,932 + -0.8
150,239 - -2.5
150,328 + -2.7
150,393 - -0.5
150,536 + -1.2
150,671 + +0.5

Or see this region's nucleotide sequence