Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5502

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13869 and 13870 are separated by 152 nucleotides mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759 13869 mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557 13870

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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246,956 - 13869 mRNA_5501 0.66 +1.3
246,981 - 13869 mRNA_5501 0.67 +1.0
247,272 - 13869 mRNA_5501 0.79 -1.9
247,418 - 13869 mRNA_5501 0.86 -1.9
247,544 - -1.1
247,715 + -0.1
248,332 - 13870 mRNA_5502 0.16 -3.1
248,456 - 13870 mRNA_5502 0.21 -0.8
248,508 + 13870 mRNA_5502 0.23 -0.5
248,893 + 13870 mRNA_5502 0.37 -1.6
249,032 + 13870 mRNA_5502 0.42 -1.6
249,141 + 13870 mRNA_5502 0.46 -1.8
249,276 + 13870 mRNA_5502 0.52 -2.4
249,479 - 13870 mRNA_5502 0.59 -1.5
249,737 + 13870 mRNA_5502 0.69 -0.2
249,831 + 13870 mRNA_5502 0.73 +0.2
249,910 - 13870 mRNA_5502 0.76 -0.5
250,010 + 13870 mRNA_5502 0.79 -1.6
250,314 + -1.0
250,326 + -0.3
250,604 - -0.5
250,606 + -0.8
250,641 - -2.4
250,739 - -0.7
250,766 + -0.8
250,893 - -1.9
250,894 + -1.7
250,896 + -0.1
250,900 - -3.5
250,902 - -1.7
250,918 + -2.9
250,943 + -0.6
251,012 - -2.8
251,078 - -2.1
251,290 + -2.2
251,387 - -1.0
251,395 - +0.4
251,397 - +0.0
251,408 + -0.5
251,556 - -1.3

Or see this region's nucleotide sequence