Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5555

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13922 and 13923 are separated by 199 nucleotides13923 and 13924 are separated by 387 nucleotides mRNA_5554: 13922 - KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily, at 364,686 to 369,253 13922 mRNA_5555: 13923 - K19984 EXOC5, SEC10 exocyst complex component 5, at 369,453 to 373,843 13923 mRNA_5556: 13924 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 374,231 to 375,171 13924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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369,135 + -1.0
369,254 + -1.2
369,260 + -0.7
369,268 + -0.8
369,275 - -0.6
369,275 - -1.1
369,288 + -0.2
369,294 + +0.3
371,866 - 13923 mRNA_5555 0.55 -1.3
372,614 - 13923 mRNA_5555 0.72 -0.0
373,395 - 13923 mRNA_5555 0.90 +1.6
373,674 - -2.2
373,943 + +1.1
373,970 + +0.6
374,081 + -1.4

Or see this region's nucleotide sequence