Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5626

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13993 and 13994 are separated by 647 nucleotides13994 and 13995 are separated by 94 nucleotides mRNA_5625: 13993 - KOG1611 Predicted short chain-type dehydrogenase, at 537,330 to 538,157 13993 mRNA_5626: 13994 - KOG1611 Predicted short chain-type dehydrogenase, at 538,805 to 539,634 13994 mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539,729 to 541,360 13995

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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538,008 - 13993 mRNA_5625 0.82 +1.3
538,029 + 13993 mRNA_5625 0.84 -2.8
538,095 + -1.5
538,188 - -2.3
538,540 + -0.4
538,895 - 13994 mRNA_5626 0.11 -0.9
539,474 + 13994 mRNA_5626 0.81 -2.1

Or see this region's nucleotide sequence