Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5663

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14030 and 14031 are separated by 389 nucleotides14031 and 14032 are separated by 112 nucleotides mRNA_5662: 14030 - Hypothetical Protein, at 627,224 to 629,083 14030 mRNA_5663: 14031 - K15441 TAD2, ADAT2 tRNA-specific adenosine deaminase 2, at 629,473 to 630,402 14031 mRNA_5664: 14032 - K01262 pepP Xaa-Pro aminopeptidase, at 630,515 to 632,715 14032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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628,529 + 14030 mRNA_5662 0.70 -1.6
628,568 + 14030 mRNA_5662 0.72 -2.2
628,674 - 14030 mRNA_5662 0.78 -1.2
628,699 - 14030 mRNA_5662 0.79 -0.0
628,849 - 14030 mRNA_5662 0.87 -2.5
628,854 + 14030 mRNA_5662 0.88 -1.5
629,131 + +1.3
629,437 + -1.2
630,472 - -2.2
630,475 - -1.6
630,477 + -0.3
630,485 - +0.2
630,487 - -1.2
630,490 - -0.8
630,497 + -0.3
630,611 - -1.2
630,612 - -0.6

Or see this region's nucleotide sequence