Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5693

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14060 and 14061 are separated by 343 nucleotides14061 and 14062 are separated by 244 nucleotides mRNA_5692: 14060 - K07342 SEC61G, SSS1, secE protein transport protein SEC61 subunit gamma and related proteins, at 703,931 to 704,550 14060 mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704,894 to 706,050 14061 mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706,295 to 707,436 14062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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704,591 + -0.9
704,730 - -0.1
704,739 + -1.7
705,309 - 14061 mRNA_5693 0.36 -2.3
705,625 - 14061 mRNA_5693 0.63 -1.4
705,655 - 14061 mRNA_5693 0.66 -0.7
705,786 - 14061 mRNA_5693 0.77 -1.1
705,788 + 14061 mRNA_5693 0.77 -1.1
705,819 + 14061 mRNA_5693 0.80 -1.3
706,022 + -1.5
706,083 + -0.0
706,209 - -1.5
706,213 - -0.3
706,221 - -1.4
706,222 + +0.1
706,244 + -1.2
706,256 - -0.1
706,260 - -2.9
706,262 + -0.6
706,392 + -1.2
706,404 + -0.5
706,422 + 14062 mRNA_5694 0.11 -0.4
706,433 + 14062 mRNA_5694 0.12 -2.0
706,435 + 14062 mRNA_5694 0.12 -0.6
706,860 + 14062 mRNA_5694 0.49 -0.0
706,872 - 14062 mRNA_5694 0.51 -1.1

Or see this region's nucleotide sequence