Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5718

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14085 and 14086 are separated by 146 nucleotides14086 and 14087 are separated by 277 nucleotides mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760,959 to 763,265 14085 mRNA_5718: 14086 - SUPERFAMILY--SSF50370, at 763,412 to 765,448 14086 mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765,726 to 767,088 14087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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762,510 - 14085 mRNA_5717 0.67 +0.5
762,940 - 14085 mRNA_5717 0.86 -1.4
763,063 + -1.7
763,102 + -2.8
763,234 + -0.3
763,967 + 14086 mRNA_5718 0.27 -1.0
764,248 - 14086 mRNA_5718 0.41 +1.3
764,250 - 14086 mRNA_5718 0.41 -3.2
764,673 + 14086 mRNA_5718 0.62 -3.5
764,937 - 14086 mRNA_5718 0.75 -0.7
764,962 - 14086 mRNA_5718 0.76 -1.7
765,386 - +0.7
765,508 - -1.2
765,526 - -3.9
765,539 - +0.8
765,544 - -2.0
765,546 - -1.7
765,546 + -3.1
765,550 - -2.4
765,555 + -1.2
765,558 + -1.9
765,559 + -1.6
765,561 - -0.7
765,571 - -2.4
765,574 + -0.6
765,655 - -0.9
765,686 + -0.2
765,686 - -4.4
765,697 - -3.4
765,698 - -0.7
765,698 - +1.4
765,698 - +0.6
765,703 - -2.1
765,705 + -1.7
765,705 + -0.7
765,712 + -1.9
765,717 + +0.2

Or see this region's nucleotide sequence