Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5743

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14110 and 14111 are separated by 224 nucleotides14111 and 14112 are separated by 720 nucleotides mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827,493 to 828,317 14110 mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828,542 to 833,992 14111 mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834,713 to 839,482 14112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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827,545 + -1.1
827,547 - -0.2
827,547 - -3.8
827,547 - +0.2
827,549 - +0.5
827,585 - 14110 mRNA_5742 0.11 -0.4
827,602 - 14110 mRNA_5742 0.13 -3.8
827,647 + 14110 mRNA_5742 0.19 -1.0
827,711 - 14110 mRNA_5742 0.26 -0.4
828,569 - -0.9
828,719 + -1.3
828,721 + -0.2
828,894 + -2.5
829,303 + 14111 mRNA_5743 0.14 -2.0
829,335 + 14111 mRNA_5743 0.15 -1.7
829,484 - 14111 mRNA_5743 0.17 -0.4
829,730 - 14111 mRNA_5743 0.22 -1.9
829,741 + 14111 mRNA_5743 0.22 -0.6
829,775 - 14111 mRNA_5743 0.23 -0.3
829,842 - 14111 mRNA_5743 0.24 -1.5
829,927 + 14111 mRNA_5743 0.25 -1.6
829,934 - 14111 mRNA_5743 0.26 -1.7
830,231 - 14111 mRNA_5743 0.31 -0.4
830,237 + 14111 mRNA_5743 0.31 -2.2
830,528 + 14111 mRNA_5743 0.36 -1.4
830,990 + 14111 mRNA_5743 0.45 +1.9
831,189 + 14111 mRNA_5743 0.49 -0.2
831,189 - 14111 mRNA_5743 0.49 -0.3
832,112 - 14111 mRNA_5743 0.65 -0.7
832,248 - 14111 mRNA_5743 0.68 -1.1
832,269 - 14111 mRNA_5743 0.68 -0.9
832,668 - 14111 mRNA_5743 0.76 -0.4
833,139 + 14111 mRNA_5743 0.84 -0.4
833,281 + 14111 mRNA_5743 0.87 +0.1
833,854 - -2.7
833,876 - -1.4
833,881 - -2.8
834,001 - -0.0
834,003 - -0.7
834,018 - +1.0
834,025 + -1.2
834,037 - -2.6
834,038 + -2.3
834,052 + +1.0
834,145 - +1.3
834,178 - -0.6
834,179 + -0.5
834,180 - +1.0
834,184 + -1.7
834,184 - +1.2
834,189 + -2.3
834,189 + -0.6
834,189 + -4.2
834,202 - +0.2
834,203 - -2.3
834,207 + -4.1
834,315 - -1.0
834,316 - -2.6
834,325 - +0.1
834,331 + -0.1
834,333 - -2.7
834,335 - -0.4
834,342 - -3.3
834,343 + -1.6
834,343 + -3.0
834,345 + -1.3
834,345 - -2.5
834,348 + -1.5
834,349 - -0.5
834,352 - +1.0
834,354 + -1.5
834,355 - -1.6
834,359 - -0.9
834,362 + -0.8
834,378 + -0.7
834,381 + -0.9
834,384 - -1.5
834,385 - -2.7
834,396 + +1.2
834,405 + -1.5
834,413 - -1.8
834,414 + -0.2
834,426 + -2.1
834,430 + -0.1
834,439 + -1.8
834,500 - -1.0
834,611 - -2.8
834,654 + +0.1
834,655 - -0.1
834,656 + -2.2
834,658 - +1.4
834,665 + -3.6
834,667 - -1.9
834,667 - -3.5
834,676 - -1.0
834,688 + -4.2
834,690 - +0.1

Or see this region's nucleotide sequence