Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5744

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14111 and 14112 are separated by 720 nucleotides14112 and 14113 are separated by 822 nucleotides mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828,542 to 833,992 14111 mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834,713 to 839,482 14112 mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840,305 to 845,790 14113

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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833,854 - -2.7
833,876 - -1.4
833,881 - -2.8
834,001 - -0.0
834,003 - -0.7
834,018 - +1.0
834,025 + -1.2
834,037 - -2.6
834,038 + -2.3
834,052 + +1.0
834,145 - +1.3
834,178 - -0.6
834,179 + -0.5
834,180 - +1.0
834,184 + -1.7
834,184 - +1.2
834,189 + -2.3
834,189 + -0.6
834,189 + -4.2
834,202 - +0.2
834,203 - -2.3
834,207 + -4.1
834,315 - -1.0
834,316 - -2.6
834,325 - +0.1
834,331 + -0.1
834,333 - -2.7
834,335 - -0.4
834,342 - -3.3
834,343 + -1.6
834,343 + -3.0
834,345 + -1.3
834,345 - -2.5
834,348 + -1.5
834,349 - -0.5
834,352 - +1.0
834,354 + -1.5
834,355 - -1.6
834,359 - -0.9
834,362 + -0.8
834,378 + -0.7
834,381 + -0.9
834,384 - -1.5
834,385 - -2.7
834,396 + +1.2
834,405 + -1.5
834,413 - -1.8
834,414 + -0.2
834,426 + -2.1
834,430 + -0.1
834,439 + -1.8
834,500 - -1.0
834,611 - -2.8
834,654 + +0.1
834,655 - -0.1
834,656 + -2.2
834,658 - +1.4
834,665 + -3.6
834,667 - -1.9
834,667 - -3.5
834,676 - -1.0
834,688 + -4.2
834,690 - +0.1
839,637 - -1.4
839,640 - -0.6
839,807 - -2.0
839,809 - -3.2
839,813 + -3.4
839,822 + -2.5
839,822 + -0.7
839,825 + -1.2
839,828 + -1.8
839,840 + -1.5
839,842 + -1.5
839,842 + -3.1
839,843 - -1.3
839,848 + +0.8
839,852 + -1.0
839,852 + -0.2
839,853 - -1.4
839,988 - -3.1
839,998 + -1.8
840,000 - +0.6
840,011 - -2.1
840,125 - -2.2
840,142 - -2.3
840,144 - +0.1
840,148 + -2.5
840,150 + -0.3
840,300 + -1.5
840,318 + +0.3

Or see this region's nucleotide sequence