Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5753

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14120 and 14121 are separated by 792 nucleotides14121 and 14122 are separated by 192 nucleotides mRNA_5752: 14120 - KOG0236 Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family), at 859,339 to 859,824 14120 mRNA_5753: 14121 - K17267 COPG coatomer subunit gamma, at 860,617 to 864,021 14121 mRNA_5754: 14122 - KOG1721 FOG Zn-finger, at 864,214 to 867,057 14122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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859,819 + -0.6
860,095 + -3.1
860,235 - -2.0
860,410 - -2.2
864,013 - -0.3
864,202 - -0.1
864,954 + 14122 mRNA_5754 0.26 +0.3

Or see this region's nucleotide sequence