Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5770

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14137 and 14138 are separated by 476 nucleotides14138 and 14139 are separated by 250 nucleotides mRNA_5769: 14137 - Hypothetical Protein, at 902,157 to 903,800 14137 mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904,277 to 904,949 14138 mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905,200 to 913,412 14139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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903,783 - -1.7
903,802 - -0.1
903,927 + +1.0
903,949 + -1.0
903,983 + -1.3
904,098 + +0.7
904,100 - +0.0
904,209 - -0.9
904,233 + -0.6
904,253 + -2.6
904,257 - +0.1
904,825 + 14138 mRNA_5770 0.81 +0.3
905,086 - +0.5
905,268 + -1.8
905,273 - +0.0
905,294 + -0.3
905,437 + -1.8
905,522 + -0.6
905,524 - -2.5
905,794 - -1.1
905,834 - -2.2

Or see this region's nucleotide sequence