Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5886

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14253 and 14254 are separated by 855 nucleotides14254 and 14255 are separated by 440 nucleotides mRNA_5885: 14253 - KOG1424 Predicted GTP-binding protein MMR1, at 1,166,047 to 1,168,638 14253 mRNA_5886: 14254 - Hypothetical Protein, at 1,169,494 to 1,170,027 14254 mRNA_5887: 14255 - Hypothetical Protein, at 1,170,468 to 1,171,652 14255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,168,541 - -1.3
1,168,660 + -1.7
1,169,210 - -1.7
1,169,729 + 14254 mRNA_5886 0.44 -0.9
1,169,851 + 14254 mRNA_5886 0.67 -0.6

Or see this region's nucleotide sequence