Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5910

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14277 and 14278 are separated by 695 nucleotides14278 and 14279 are separated by 202 nucleotides mRNA_5909: 14277 - K00077 panE, apbA 2-dehydropantoate 2-reductase, at 1,220,676 to 1,222,238 14277 mRNA_5910: 14278 - K11094 SNRPB2 U2 small nuclear ribonucleoprotein B'', at 1,222,934 to 1,224,150 14278 mRNA_5911: 14279 - ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSitePatterns-EGF-like domain signature 2.-PS01186,ProSiteProfiles-EGF-like domain profile.-PS50026, at 1,224,353 to 1,227,750 14279

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,222,555 + -0.6
1,222,558 + -1.6
1,222,563 - -3.1
1,222,570 - -1.7
1,222,694 + +1.1
1,222,695 - -1.6
1,222,696 - -0.7
1,222,701 + -0.4
1,222,713 - -0.6
1,222,714 + -0.6
1,222,815 + -2.4
1,222,845 - -2.3
1,222,849 - +1.7
1,222,853 + -0.1
1,222,856 + +0.1
1,222,863 - -0.5
1,222,867 + -0.8
1,222,868 + +0.9
1,222,873 + -1.9
1,224,150 - -2.1
1,224,188 - -2.2
1,224,277 + -2.1
1,224,301 + +0.8
1,224,329 + -0.7
1,224,464 + +0.2
1,224,863 - 14279 mRNA_5911 0.15 -1.5
1,224,965 - 14279 mRNA_5911 0.18 -0.7
1,225,061 + 14279 mRNA_5911 0.21 -2.4
1,225,141 - 14279 mRNA_5911 0.23 -3.0

Or see this region's nucleotide sequence