Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5944

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14311 and 14312 are separated by 187 nucleotides14312 and 14313 are separated by 186 nucleotides mRNA_5943: 14311 - Hypothetical Protein, at 1,292,366 to 1,293,493 14311 mRNA_5944: 14312 - Hypothetical Protein, at 1,293,681 to 1,295,115 14312 mRNA_5945: 14313 - Hypothetical Protein, at 1,295,302 to 1,296,454 14313

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,292,973 - 14311 mRNA_5943 0.54 -1.2
1,293,126 + 14311 mRNA_5943 0.67 +0.2
1,293,165 + 14311 mRNA_5943 0.71 -0.4
1,293,277 + 14311 mRNA_5943 0.81 -2.5
1,293,404 - -1.4
1,293,408 + -0.9
1,293,411 - -0.7
1,293,424 - -3.9
1,293,425 + -1.1
1,293,427 - -0.8
1,293,456 + -0.5
1,293,722 + -1.3
1,293,736 - -1.0
1,294,013 - 14312 mRNA_5944 0.23 -0.3
1,294,464 - 14312 mRNA_5944 0.55 +2.2
1,294,483 - 14312 mRNA_5944 0.56 +0.6
1,294,497 + 14312 mRNA_5944 0.57 -0.6
1,294,685 + 14312 mRNA_5944 0.70 -1.3
1,294,747 + 14312 mRNA_5944 0.74 -0.0
1,294,884 + 14312 mRNA_5944 0.84 +0.1
1,295,031 - -3.4
1,295,042 - -3.0
1,295,066 - -2.8
1,295,150 - -2.3
1,295,638 - 14313 mRNA_5945 0.29 -1.1
1,295,666 - 14313 mRNA_5945 0.32 -1.2
1,295,814 + 14313 mRNA_5945 0.44 +0.2
1,295,936 - 14313 mRNA_5945 0.55 +1.3
1,296,097 + 14313 mRNA_5945 0.69 -3.5

Or see this region's nucleotide sequence