Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5981

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14348 and 14349 are separated by 584 nucleotides14349 and 14350 are separated by 847 nucleotides mRNA_5980: 14348 - K12592 C1D, LRP1 exosome complex protein LRP1, at 1,370,321 to 1,371,409 14348 mRNA_5981: 14349 - Hypothetical Protein, at 1,371,994 to 1,372,598 14349 mRNA_5982: 14350 - KOG0379 Kelch repeat-containing proteins, at 1,373,446 to 1,378,307 14350

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,370,997 - 14348 mRNA_5980 0.62 -3.1
1,371,557 + -1.1
1,371,719 + -1.0
1,371,743 + +0.4
1,371,765 + -2.1
1,371,767 - -0.0
1,371,887 - +0.2
1,372,061 + 14349 mRNA_5981 0.11 -3.0
1,372,358 - 14349 mRNA_5981 0.60 -1.5
1,372,483 + 14349 mRNA_5981 0.81 -3.6
1,372,585 + +0.1
1,372,656 + -0.3
1,372,721 + -1.1
1,372,777 - -1.2
1,372,798 + -1.4
1,372,963 - -2.2

Or see this region's nucleotide sequence