Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6153

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14520 and 14521 are separated by 820 nucleotides mRNA_6152: 14520 - HMMPfam-Slx4 endonuclease-PF09494, at 127,167 to 130,520 14520 mRNA_6153: 14521 - K00757 udp, UPP uridine phosphorylase, at 131,341 to 132,602 14521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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130,854 + -0.5
130,888 - -2.7
130,889 + -2.1
131,021 + -1.8
131,152 - -1.1
131,169 + -0.1
131,575 - 14521 mRNA_6153 0.19 -1.7
131,631 + 14521 mRNA_6153 0.23 -1.9
131,860 - 14521 mRNA_6153 0.41 -0.7
132,029 + 14521 mRNA_6153 0.55 -3.0
132,148 + 14521 mRNA_6153 0.64 -0.8
132,402 - 14521 mRNA_6153 0.84 -2.1
132,455 + 14521 mRNA_6153 0.88 -0.7
132,710 + +0.5
132,931 + +2.2
133,134 - -1.1
133,280 - -1.9
133,280 + +0.5
133,297 + -2.6
133,297 + -1.0
133,299 + -0.9
133,347 - -0.8
133,402 - -0.0
133,449 - -0.4
133,449 - -2.6
133,456 + -0.3
133,459 - -2.9
133,459 - -1.8
133,462 + -0.5
133,474 - -0.5
133,474 - -2.7
133,475 + -0.2
133,476 - -0.7
133,498 - -1.2
133,498 + -0.5
133,506 + -0.9
133,509 + -2.3
133,597 + +1.0
133,600 - -1.7

Or see this region's nucleotide sequence