Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6176

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14544 and 14545 are separated by 379 nucleotides mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793 14545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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181,338 - -2.0
181,360 - -1.2
181,361 + -3.5
181,394 - +1.2
181,493 - +0.5
181,517 - -2.9
181,529 - +0.1
181,802 - -1.0
182,113 - -2.7
182,246 + +0.7
182,958 - -3.0
182,973 + -2.5
183,109 - +0.1
183,124 - -0.9
183,126 + +2.3
183,255 - -0.7
183,258 - -0.9
183,267 + -2.3
183,269 - -1.1
183,270 - +1.2
183,280 - -0.2
183,397 - -2.0
183,410 + -1.9
183,421 - -1.2
183,551 - 14545 mRNA_6177 0.15 -2.4
183,560 + 14545 mRNA_6177 0.15 -2.1
183,572 - 14545 mRNA_6177 0.16 +0.3
183,572 - 14545 mRNA_6177 0.16 +0.7
183,588 + 14545 mRNA_6177 0.17 -2.3
183,734 - 14545 mRNA_6177 0.27 -2.8
183,877 + 14545 mRNA_6177 0.37 -1.0

Or see this region's nucleotide sequence