Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6207

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14574 and 14575 are separated by 562 nucleotides14575 and 14576 are separated by 683 nucleotides mRNA_6206: 14574 - K10524 NRK1_2 nicotinamide/nicotinate riboside kinase, at 246,520 to 247,686 14574 mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882 14575 mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082 14576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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247,249 - 14574 mRNA_6206 0.62 -2.3
247,733 - -3.0
247,883 - -1.6
247,886 + +0.8
247,890 + +0.4
247,919 + +0.5
247,922 - -0.5
248,176 + -2.2
248,317 - 14575 mRNA_6207 0.11 -0.2
248,344 - 14575 mRNA_6207 0.15 -3.3
248,505 + 14575 mRNA_6207 0.40 -2.0
248,814 + 14575 mRNA_6207 0.89 -0.6
249,011 - -3.2
249,075 - -0.7
249,078 - -0.6
249,082 + -1.1
249,083 + -1.5
249,195 - -1.4
249,198 + -1.2
249,211 - -2.3
249,227 - +0.5
249,245 - +0.5
249,367 - -0.7
249,368 + +0.6
249,404 - -1.0
249,428 + -1.1
249,506 + -0.8
249,515 + -0.4
249,796 + 14576 mRNA_6208 0.15 -0.6

Or see this region's nucleotide sequence