Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6208

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14575 and 14576 are separated by 683 nucleotides mRNA_6207: 14575 - KOG2711 Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase, at 248,249 to 248,882 14575 mRNA_6208: 14576 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 249,566 to 251,082 14576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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248,814 + 14575 mRNA_6207 0.89 -0.6
249,011 - -3.2
249,075 - -0.7
249,078 - -0.6
249,082 + -1.1
249,083 + -1.5
249,195 - -1.4
249,198 + -1.2
249,211 - -2.3
249,227 - +0.5
249,245 - +0.5
249,367 - -0.7
249,368 + +0.6
249,404 - -1.0
249,428 + -1.1
249,506 + -0.8
249,515 + -0.4
249,796 + 14576 mRNA_6208 0.15 -0.6
250,082 + 14576 mRNA_6208 0.34 -3.3
250,219 + 14576 mRNA_6208 0.43 -4.4
250,515 + 14576 mRNA_6208 0.63 +1.0
250,831 + 14576 mRNA_6208 0.83 -5.4
250,832 - 14576 mRNA_6208 0.83 -2.0
251,078 - +0.6
251,160 + -2.7
251,258 - +0.4
251,259 + -0.5
251,285 + -0.4
251,408 - -0.8
251,413 + +0.8
251,414 - -0.2
251,414 - -1.5
251,414 - -2.7
251,415 + +1.1
251,430 + -3.4
251,432 + -1.3
251,441 + -2.0
251,443 - -1.8
251,589 - -1.1
251,605 + +1.8
251,630 + -1.5
251,634 + -0.5
251,712 + -2.3
251,734 - +0.2
251,888 + -0.0
251,913 + -0.4

Or see this region's nucleotide sequence