Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6210

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14578 and 14579 are separated by 94 nucleotides mRNA_6210: 14578 - HMMPfam-DNA replication and checkpoint protein-PF11719, at 259,618 to 261,776 14578 mRNA_6211: 14579 - Hypothetical Protein, at 261,871 to 262,723 14579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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258,683 - -3.3
258,684 - -2.5
258,703 - -1.1
258,708 + -3.1
258,857 - -0.8
258,986 + -3.7
258,989 + -1.2
259,000 + -2.1
259,012 + -2.5
259,283 + +0.2
259,301 + -0.1
259,422 + -0.3
259,429 - +0.4
259,451 - -1.7
259,470 + -2.2
259,562 + -1.0
259,570 + -1.1
259,571 + -1.8
262,098 - 14579 mRNA_6211 0.27 -2.5
262,104 - 14579 mRNA_6211 0.27 -2.3
262,209 + 14579 mRNA_6211 0.40 -1.8
262,516 + 14579 mRNA_6211 0.76 -2.8

Or see this region's nucleotide sequence