Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6218

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14585 and 14586 are separated by 705 nucleotides14586 and 14587 are separated by 435 nucleotides mRNA_6217: 14585 - K17362 ACOT13 acyl-coenzyme A thioesterase 13, at 275,731 to 276,667 14585 mRNA_6218: 14586 - K03687 GRPE molecular chaperone GrpE, at 277,373 to 277,948 14586 mRNA_6219: 14587 - HMMPfam-Sec20-PF03908, at 278,384 to 280,109 14587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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276,584 + -0.4
276,592 - -0.1
276,595 - -0.7
276,904 - -3.3
277,031 + -2.9
277,171 - -1.8
277,194 - -3.1
277,332 - -0.6
278,365 - +0.5

Or see this region's nucleotide sequence