Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6244

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14611 and 14612 are separated by 692 nucleotides mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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339,846 + 14611 mRNA_6243 0.89 -1.0
339,858 + 14611 mRNA_6243 0.90 +0.6
339,861 - -0.3
339,992 + -0.4
339,998 + +1.2
340,150 + -0.4
340,297 - -0.4
340,298 + -1.5
340,307 + -2.7
340,308 - -1.4
340,421 - +0.2
340,453 - -2.1
340,557 - -2.6
340,566 - -2.4
340,573 + -0.4
340,584 + -2.2
340,588 + -1.8
340,588 - -0.0
340,691 + -0.6
340,693 - -1.4
340,741 - -1.8
342,148 - -2.6
342,180 + -1.7
342,264 + -1.7
342,309 - -0.8
342,428 + -2.7
342,453 + -2.0
342,463 + +0.6
342,469 + -1.4
342,470 - -1.9
342,607 - -1.6
342,609 - -2.9
342,621 + -2.3
342,659 - -1.4
342,760 - -1.2
342,778 + -1.0
342,797 + -0.3
342,828 - +0.6
342,886 + -0.5
342,922 + -0.8
342,941 + -2.1
342,963 - -2.7
342,971 + -1.2
342,988 - -2.0

Or see this region's nucleotide sequence