Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6264

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14631 and 14632 are separated by 89 nucleotides14632 and 14633 are separated by 371 nucleotides mRNA_6263: 14631 - Hypothetical Protein, at 389,857 to 392,694 14631 mRNA_6264: 14632 - KOG1550 Extracellular protein SEL-1 and related proteins, at 392,784 to 393,598 14632 mRNA_6265: 14633 - K07897 RAB7A Ras-related protein Rab-7A, at 393,970 to 395,012 14633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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391,924 - 14631 mRNA_6263 0.73 +0.4
392,268 + 14631 mRNA_6263 0.85 +0.0
392,539 - -1.3
392,692 + -0.9
392,870 - 14632 mRNA_6264 0.11 +1.4
393,130 - 14632 mRNA_6264 0.42 -2.7
393,395 - 14632 mRNA_6264 0.75 -1.9
393,462 + 14632 mRNA_6264 0.83 -0.8
393,888 - -1.5

Or see this region's nucleotide sequence