Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6267

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14634 and 14635 are separated by 219 nucleotides14635 and 14636 are separated by 167 nucleotides mRNA_6266: 14634 - Hypothetical Protein, at 396,556 to 399,256 14634 mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399,476 to 403,885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404,053 to 405,342 14636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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398,544 + 14634 mRNA_6266 0.74 +2.0
399,156 - -1.0
399,162 - -2.0
399,165 - -0.4
399,179 - -1.0
399,185 + -1.0
399,188 - -4.5
399,300 - -2.1
399,305 - -1.4
399,305 - -1.4
399,306 - +0.2
399,315 + -0.8
399,316 - -0.0
399,316 - -2.4
399,318 - -0.2
399,324 - -1.6
399,325 + -0.5
399,338 + +0.1
399,344 - -2.3
399,349 - -1.0
399,489 + -1.5
399,523 + -0.9
399,654 + -1.4
399,796 - -3.1
399,915 - -2.4
400,496 - 14635 mRNA_6267 0.23 -1.6
401,055 + 14635 mRNA_6267 0.36 -2.5
401,263 - 14635 mRNA_6267 0.41 -2.3
401,636 - 14635 mRNA_6267 0.49 -2.3
402,015 + 14635 mRNA_6267 0.58 -1.1
402,045 + 14635 mRNA_6267 0.58 -2.7
402,328 + 14635 mRNA_6267 0.65 -2.5
402,496 - 14635 mRNA_6267 0.68 -2.3
402,816 + 14635 mRNA_6267 0.76 -1.5
402,901 - 14635 mRNA_6267 0.78 -0.4
403,180 - 14635 mRNA_6267 0.84 -3.2
403,184 + 14635 mRNA_6267 0.84 -1.5
403,341 + 14635 mRNA_6267 0.88 -2.9
403,477 + -4.1
403,491 + -1.7
403,496 - -1.7
403,517 - -1.4
403,521 - -2.9
403,641 - -2.9
403,663 + -2.8
403,667 - -2.7
403,667 - +1.3
403,673 + -0.9
403,683 + -2.2
403,684 + -2.1
403,699 + -2.0
403,945 - -1.0
403,952 - -2.0
403,967 + -2.0
403,973 + -1.0
403,973 + -2.8
403,982 - -1.3
403,985 - -1.2
403,986 + -0.6
403,986 + -1.6
403,989 + -1.8
403,994 - -1.8
403,995 + -1.3
403,998 + -1.2
403,999 - -0.8
404,000 + -0.7
404,005 + -2.7
404,007 + -1.4
404,013 + -0.3
404,021 + -0.1
404,126 - -1.6
404,133 - -0.3
404,139 - +0.0
404,143 + +0.6
404,159 + -0.8
404,164 - -0.6
404,164 - -2.3
404,288 - 14636 mRNA_6268 0.18 -0.2
404,299 - 14636 mRNA_6268 0.19 +0.5

Or see this region's nucleotide sequence