Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6277

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14644 and 14645 are separated by 128 nucleotides14645 and 14646 are separated by 140 nucleotides mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422,902 to 424,921 14644 mRNA_6277: 14645 - KOG2812 Uncharacterized conserved protein, at 425,050 to 426,717 14645 mRNA_6278: 14646 - K17080 PHB1 prohibitin 1, at 426,858 to 428,286 14646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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424,067 + 14644 mRNA_6276 0.58 -2.8
424,288 + 14644 mRNA_6276 0.69 +0.8
424,886 - -2.0
424,897 - -1.9
426,796 + -0.0
426,924 - -1.1
426,937 - -2.5
426,941 + -0.3
427,356 + 14646 mRNA_6278 0.35 +1.2

Or see this region's nucleotide sequence