Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6304

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14671 and 14672 are separated by 314 nucleotides mRNA_6303: 14671 - HMMPfam-Uncharacterised protein family UPF0052-PF01933,SUPERFAMILY--SSF142338, at 480,428 to 482,328 14671 mRNA_6304: 14672 - Hypothetical Protein, at 482,643 to 484,084 14672

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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481,855 - 14671 mRNA_6303 0.75 -0.9
482,110 - 14671 mRNA_6303 0.88 -1.3
482,253 - -0.5
482,386 - +0.6
482,428 - -1.5
482,431 + -1.2
482,431 + -1.5
482,451 - -1.2
482,732 + +0.9
482,753 + -3.7
483,027 + 14672 mRNA_6304 0.27 -1.0
483,211 - 14672 mRNA_6304 0.39 -1.3
483,288 - 14672 mRNA_6304 0.45 +0.5
483,309 + 14672 mRNA_6304 0.46 -3.0
483,642 + 14672 mRNA_6304 0.69 -0.6
483,738 - 14672 mRNA_6304 0.76 -2.5
483,881 + 14672 mRNA_6304 0.86 -1.4
484,023 - -1.5
484,049 + -0.3
484,323 - -2.0
484,323 - -1.0
484,326 + -0.0
484,328 - -2.7
484,329 - -0.8
484,335 + -2.4
484,340 - -1.2
484,344 + -3.8
484,345 + -3.4
484,354 + -3.0
484,355 - -2.3
484,356 + -0.3
484,357 - -1.5
484,358 - -1.2
484,363 + -2.1
484,365 - +0.0
484,366 - -0.6
484,367 + -1.1
484,367 + -1.4
484,372 + -0.4
484,373 + -1.3
484,430 + +0.7
484,457 + -1.8
484,489 - -0.3
484,504 - +0.7
484,505 + +0.1
484,520 + -0.2
484,523 + -0.8
484,629 - -2.5
484,650 - -1.8
484,660 + -0.9
484,660 - -0.4
484,666 - +2.3
484,673 - -2.4
484,711 + -0.2
484,724 + -1.4
484,756 + -0.7
484,758 + -2.1
484,758 + -3.2
484,773 - -0.1
484,773 - -0.3
484,774 + -1.0
484,781 + -0.6
484,792 - -1.0
484,793 - +0.2
484,868 + -0.5
484,882 + -2.4

Or see this region's nucleotide sequence