Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6305

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370 14673

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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484,457 + -1.8
484,489 - -0.3
484,504 - +0.7
484,505 + +0.1
484,520 + -0.2
484,523 + -0.8
484,629 - -2.5
484,650 - -1.8
484,660 + -0.9
484,660 - -0.4
484,666 - +2.3
484,673 - -2.4
484,711 + -0.2
484,724 + -1.4
484,756 + -0.7
484,758 + -2.1
484,758 + -3.2
484,773 - -0.1
484,773 - -0.3
484,774 + -1.0
484,781 + -0.6
484,792 - -1.0
484,793 - +0.2
484,868 + -0.5
484,882 + -2.4
485,372 - -1.4
485,931 - 14673 mRNA_6305 0.52 +0.3
486,122 + 14673 mRNA_6305 0.73 -1.3
486,333 - -2.0
486,381 + -0.8
486,423 - -2.5
486,426 - -3.6
486,564 - +0.8
486,641 + -0.6
486,657 - +0.7
486,779 - -1.0
486,782 - -2.1
486,812 + -2.8
486,957 + -2.9
486,962 - -1.4
486,963 + +0.0
486,980 - +0.8
486,981 + +0.8
487,111 + -1.5
487,247 - -0.7

Or see this region's nucleotide sequence