Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6324

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14691 and 14692 are separated by 662 nucleotides14692 and 14693 are separated by 579 nucleotides mRNA_6323: 14691 - Hypothetical Protein, at 545,405 to 548,741 14691 mRNA_6324: 14692 - Hypothetical Protein, at 549,404 to 551,693 14692 mRNA_6325: 14693 - Hypothetical Protein, at 552,273 to 554,258 14693

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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548,537 - -3.2
548,699 + +0.1
548,856 + -1.0
548,988 + -1.0
548,998 - -2.1
549,140 - -0.2
549,147 - -2.6
549,149 - -1.5
549,149 - +0.7
549,235 + +1.7
549,271 + -1.2
549,280 + -1.0
549,288 + -1.1
549,292 + -0.4
549,296 - +0.5
549,300 + -1.0
549,310 - -1.8
549,312 - -2.9
549,314 + -2.7
549,318 - -0.5
549,318 + -0.1
549,319 - +0.2
549,320 + -1.2
549,324 - -0.4
549,402 - -0.8
549,443 - +0.3
549,451 + -0.7
549,455 + -2.4
549,479 - -2.3
549,533 - -1.6
549,555 - -0.6
549,581 + -1.6
549,647 + 14692 mRNA_6324 0.11 -0.8
549,708 - 14692 mRNA_6324 0.13 -1.9
549,742 - 14692 mRNA_6324 0.15 -1.6
549,746 + 14692 mRNA_6324 0.15 -0.8
549,754 - 14692 mRNA_6324 0.15 -0.8
549,755 + 14692 mRNA_6324 0.15 -1.7
549,764 - 14692 mRNA_6324 0.16 +0.5
549,769 + 14692 mRNA_6324 0.16 -3.7
549,774 + 14692 mRNA_6324 0.16 -0.4
549,914 + 14692 mRNA_6324 0.22 -2.0
550,490 - 14692 mRNA_6324 0.47 -0.2
550,514 - 14692 mRNA_6324 0.48 -1.8
550,795 - 14692 mRNA_6324 0.61 -1.2
550,929 - 14692 mRNA_6324 0.67 -1.8
551,084 + 14692 mRNA_6324 0.73 +1.0
551,086 + 14692 mRNA_6324 0.73 +0.3
551,228 - 14692 mRNA_6324 0.80 -3.3
551,505 - +0.1
551,681 - -0.4
551,780 - -1.3
551,787 - +1.1
551,787 - -1.5
551,792 + -2.3
551,808 - -1.9
551,823 - -1.5
551,827 - -3.2
551,832 - -0.2
551,837 + -2.8
551,838 - -0.7
551,841 - -0.9
551,842 + -1.1
551,846 + +0.5
551,997 + -1.1
552,126 + +1.2
552,132 + +2.0
552,438 - -4.6

Or see this region's nucleotide sequence