Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6380

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14747 and 14748 are separated by 474 nucleotides14748 and 14749 are separated by 202 nucleotides mRNA_6379: 14747 - Hypothetical Protein, at 676,687 to 677,946 14747 mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678,421 to 679,401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679,604 to 681,699 14749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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677,766 - 14747 mRNA_6379 0.86 -1.3
677,780 - 14747 mRNA_6379 0.87 -1.9
677,804 + 14747 mRNA_6379 0.89 -2.5
678,013 + +0.8
678,344 - -2.6
678,345 + -1.3
678,517 - -2.8
678,534 - 14748 mRNA_6380 0.12 -0.4
678,638 - 14748 mRNA_6380 0.22 -1.2
678,649 - 14748 mRNA_6380 0.23 +0.5
678,675 - 14748 mRNA_6380 0.26 -0.9
678,955 + 14748 mRNA_6380 0.54 -1.6
679,249 + 14748 mRNA_6380 0.84 -0.4
679,370 - +0.1
679,439 + -1.1
679,527 - +0.7
679,572 - -1.2
679,980 + 14749 mRNA_6381 0.18 +0.4
680,227 - 14749 mRNA_6381 0.30 -0.5
680,228 + 14749 mRNA_6381 0.30 -2.0
680,247 + 14749 mRNA_6381 0.31 +0.1

Or see this region's nucleotide sequence