Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6408

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14775 and 14776 are separated by 111 nucleotides14776 and 14777 are separated by 250 nucleotides mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739,479 to 740,196 14775 mRNA_6408: 14776 - K19308 BMT6 25S rRNA (uracil2843-N3)-methyltransferase, at 740,308 to 741,629 14776 mRNA_6409: 14777 - KOG2806 Chitinase, at 741,880 to 743,909 14777

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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739,509 + -2.8
739,858 - 14775 mRNA_6407 0.53 -1.7
739,922 + 14775 mRNA_6407 0.62 -0.6
740,097 + 14775 mRNA_6407 0.86 -0.4
740,109 + 14775 mRNA_6407 0.88 -0.7
740,118 + 14775 mRNA_6407 0.89 -0.6
740,245 + -1.4
740,256 + +0.6
740,536 + 14776 mRNA_6408 0.17 -1.6
740,658 + 14776 mRNA_6408 0.26 +1.0
740,682 + 14776 mRNA_6408 0.28 -0.1
740,829 - 14776 mRNA_6408 0.39 -0.1
741,116 + 14776 mRNA_6408 0.61 -2.6
741,148 + 14776 mRNA_6408 0.64 -1.9
741,275 - 14776 mRNA_6408 0.73 -0.7
741,645 + -0.8
741,725 - -0.8
741,746 - -2.1
741,792 - -0.5
742,366 + 14777 mRNA_6409 0.24 -0.7
742,415 + 14777 mRNA_6409 0.26 -3.0
742,605 - 14777 mRNA_6409 0.36 -0.5

Or see this region's nucleotide sequence