Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6411

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14779 and 14780 are separated by 196 nucleotides mRNA_6411: 14779 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 746,136 to 749,829 14779 mRNA_6412: 14780 - HMMPfam-F-box-like-PF12937, at 750,026 to 751,228 14780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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745,168 + -1.5
745,204 + -1.8
745,450 - -1.2
745,617 - -0.2
745,888 - -3.1
745,893 - -1.3
745,907 - -1.6
745,908 - -1.5
745,909 + -0.3
745,922 - -0.9
745,922 - -1.9
746,040 + -1.9
746,043 - -0.8
746,051 - -1.6
746,053 + -3.0
746,062 - -1.1
746,085 + -0.8
746,215 - +0.2
746,501 + -1.9
746,510 + 14779 mRNA_6411 0.10 +1.5
746,969 + 14779 mRNA_6411 0.23 -1.2
749,780 + -3.2
750,052 + -0.5
750,088 + -0.9
750,471 - 14780 mRNA_6412 0.37 -0.5
750,660 + 14780 mRNA_6412 0.53 -3.0

Or see this region's nucleotide sequence