Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6414

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14781 and 14782 are separated by 768 nucleotides mRNA_6413: 14781 - K08490 STX5 syntaxin 5, at 751,427 to 753,086 14781 mRNA_6414: 14782 - K15731 CTDSP carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, at 753,855 to 754,896 14782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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753,002 + +0.4
753,183 + -1.2
753,275 + -1.5
753,428 + -1.2
755,209 + -3.0
755,329 - -0.0
755,872 + -2.4
755,887 - -0.7

Or see this region's nucleotide sequence