Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6512

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14879 and 14880 are separated by 700 nucleotides mRNA_6511: 14879 - KOG1061 Vesicle coat complex AP-1/AP-2/AP-4, beta subunit, at 957,462 to 960,234 14879 mRNA_6512: 14880 - KOG1089 Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6, at 960,935 to 963,520 14880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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960,103 - -1.2
960,103 - -2.3
960,103 - -1.5
960,109 + -0.5
960,185 + -0.0
960,203 - +1.5
960,204 + -0.9
960,207 - -0.3
960,217 + -2.3
960,363 - -2.2
960,525 - -2.0
960,639 + -1.9
960,663 + +0.6
960,696 + -1.8
960,791 + +0.1
960,797 - -0.9
960,825 + -0.6
960,839 + -2.4
960,942 + -2.2
961,398 - 14880 mRNA_6512 0.18 +0.6
961,739 - 14880 mRNA_6512 0.31 +1.3
961,835 - 14880 mRNA_6512 0.35 -0.9
962,115 - 14880 mRNA_6512 0.46 +0.7
962,118 + 14880 mRNA_6512 0.46 -1.2
962,245 + 14880 mRNA_6512 0.51 -0.3
962,262 - 14880 mRNA_6512 0.51 -1.2
962,697 + 14880 mRNA_6512 0.68 -2.0
962,701 + 14880 mRNA_6512 0.68 -0.7
962,867 + 14880 mRNA_6512 0.75 -1.2
963,151 + 14880 mRNA_6512 0.86 -0.0
963,151 + 14880 mRNA_6512 0.86 -3.1
963,167 - 14880 mRNA_6512 0.86 -1.5
963,436 - -2.8
963,695 + -0.9
963,756 + +1.2
963,829 - -2.5
963,859 - -3.1
963,888 - -4.4
963,990 + -1.3
964,433 - -1.2
964,512 - -1.0

Or see this region's nucleotide sequence