Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6522

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14889 and 14890 are separated by 252 nucleotides mRNA_6521: 14889 - K14788 NOL10, ENP2 ribosome biogenesis protein ENP2, at 989,346 to 992,026 14889 mRNA_6522: 14890 - K19871 SALL sal-like protein, at 992,279 to 994,205 14890

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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991,729 + 14889 mRNA_6521 0.89 -3.8
992,009 - -1.3
992,021 - -2.4
992,115 + +0.1
992,132 + +0.2
992,133 + -4.2
992,159 + +0.5
992,205 + -2.8
992,246 - -0.6
992,319 + -0.3
992,477 + 14890 mRNA_6522 0.10 -1.0
992,770 - 14890 mRNA_6522 0.25 +0.0
992,771 + 14890 mRNA_6522 0.26 -1.3
992,780 - 14890 mRNA_6522 0.26 -1.3
992,851 + 14890 mRNA_6522 0.30 -2.9
992,939 - 14890 mRNA_6522 0.34 -0.3
993,903 - 14890 mRNA_6522 0.84 -2.5
993,948 - 14890 mRNA_6522 0.87 -1.1
993,994 + 14890 mRNA_6522 0.89 -2.2
994,112 + -2.9
994,136 - -1.2
994,198 + -2.5
994,232 + -1.3
994,261 - -1.8
994,262 + +0.3
994,276 - -1.0
994,286 - -0.1
994,286 - -0.6
994,295 - -0.8
994,297 + -1.5
994,298 + -3.1
994,302 + +0.0
994,305 + +0.9
994,337 - -1.0
994,446 + -0.2
994,467 - -1.8
994,468 - +0.0
994,468 + -2.1
994,469 - -1.7
994,480 + -3.3
994,496 + -3.6
994,499 - -0.7
994,508 + +0.1
994,617 + -1.5
994,618 - -1.1
994,626 - -0.4
994,629 - -2.4
994,631 - -0.7
994,644 - -1.0
994,651 + +0.6
994,657 + -0.8
994,665 + +0.2
994,728 - -3.9
994,733 + -3.0
994,738 - -2.2
994,874 - -2.2
994,892 + -1.1
994,934 + +1.2
994,952 + -0.2
994,955 - -0.4
994,959 - -1.3
994,969 + -1.6
994,975 + +1.7
994,976 - -1.4
994,976 + -0.4
994,976 + -1.8
995,147 + -0.9
995,160 - -3.4

Or see this region's nucleotide sequence