Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6523

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14891 and 14892 are separated by 308 nucleotides mRNA_6523: 14891 - K14567 UTP14 U3 small nucleolar RNA-associated protein 14, at 995,570 to 999,222 14891 mRNA_6524: 14892 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 999,531 to 1,001,982 14892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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994,617 + -1.5
994,618 - -1.1
994,626 - -0.4
994,629 - -2.4
994,631 - -0.7
994,644 - -1.0
994,651 + +0.6
994,657 + -0.8
994,665 + +0.2
994,728 - -3.9
994,733 + -3.0
994,738 - -2.2
994,874 - -2.2
994,892 + -1.1
994,934 + +1.2
994,952 + -0.2
994,955 - -0.4
994,959 - -1.3
994,969 + -1.6
994,975 + +1.7
994,976 - -1.4
994,976 + -0.4
994,976 + -1.8
995,147 + -0.9
995,160 - -3.4
995,272 + -1.4
995,275 - -2.7
995,281 - -2.8
995,289 + +0.5
995,293 + +1.9
995,311 - -2.8
995,324 + +0.6
995,330 + -2.6
995,347 + +0.3
995,418 - -1.7
995,439 + +0.5
995,451 + -1.1
998,415 + 14891 mRNA_6523 0.78 -2.7
999,329 + -1.6
999,421 - -1.8
999,424 - -0.8
999,769 - -0.5
999,869 + 14892 mRNA_6524 0.14 -1.5
1,000,161 + 14892 mRNA_6524 0.26 -1.7

Or see this region's nucleotide sequence