Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6528

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14894 and 14895 are separated by 214 nucleotides14895 and 14896 are separated by 198 nucleotides14896 and 14897 are separated by 297 nucleotides mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1,004,889 to 1,006,380 14894 mRNA_6527: 14895 - K18178 COA5, PET191 cytochrome c oxidase assembly factor 5, at 1,006,595 to 1,007,064 14895 mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1,007,263 to 1,008,621 14896 mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1,008,919 to 1,009,693 14897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,006,424 - -0.2
1,006,427 + +0.8
1,006,432 + -1.0
1,006,610 + -1.4
1,007,067 - -3.4
1,007,604 + 14896 mRNA_6528 0.25 -0.9
1,007,617 - 14896 mRNA_6528 0.26 -0.7
1,007,890 - 14896 mRNA_6528 0.46 -0.4
1,007,928 + 14896 mRNA_6528 0.49 -0.3
1,008,165 - 14896 mRNA_6528 0.66 -1.5
1,008,630 - -2.2
1,008,876 - -1.8
1,008,979 + -0.8
1,009,000 - 14897 mRNA_6529 0.10 -2.2
1,009,021 - 14897 mRNA_6529 0.13 -0.2
1,009,146 + 14897 mRNA_6529 0.29 -2.3
1,009,197 - 14897 mRNA_6529 0.36 -1.1
1,009,207 - 14897 mRNA_6529 0.37 +0.6
1,009,304 - 14897 mRNA_6529 0.50 -1.2
1,009,438 - 14897 mRNA_6529 0.67 -0.3
1,009,450 - 14897 mRNA_6529 0.69 -0.2

Or see this region's nucleotide sequence