Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6533

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14900 and 14901 are separated by 522 nucleotides14901 and 14902 are separated by 685 nucleotides mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1,015,408 to 1,016,084 14900 mRNA_6533: 14901 - Hypothetical Protein, at 1,016,607 to 1,018,087 14901 mRNA_6534: 14902 - HMMPfam-Opy2 protein-PF09463, at 1,018,773 to 1,021,328 14902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,015,649 - 14900 mRNA_6532 0.36 -3.2
1,015,660 + 14900 mRNA_6532 0.37 -0.4
1,016,975 + 14901 mRNA_6533 0.25 +0.0
1,017,266 + 14901 mRNA_6533 0.44 -0.6
1,017,830 + 14901 mRNA_6533 0.83 -0.0
1,017,960 - -2.3
1,018,430 - -2.5
1,018,432 - +0.5
1,018,611 + -1.6
1,018,706 - +0.7
1,018,710 + -0.9
1,019,042 + 14902 mRNA_6534 0.11 +1.0

Or see this region's nucleotide sequence