Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6563

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14931 and 14932 are separated by 334 nucleotides mRNA_6563: 14931 - Hypothetical Protein, at 1,107,089 to 1,108,323 14931 mRNA_6564: 14932 - Hypothetical Protein, at 1,108,658 to 1,110,083 14932

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,106,284 - -0.5
1,106,292 - -0.9
1,106,304 - -3.4
1,106,304 - -2.9
1,106,444 - +1.7
1,106,473 + -2.3
1,106,565 - -0.1
1,106,566 - -2.5
1,106,566 - -0.1
1,106,620 - -0.2
1,106,732 - -3.0
1,106,840 - -2.2
1,106,923 + -2.4
1,107,022 - -1.3
1,107,060 + -3.7
1,107,161 + -2.9
1,107,323 + 14931 mRNA_6563 0.19 +0.2
1,107,897 - 14931 mRNA_6563 0.65 -2.1
1,108,361 + -1.2
1,108,388 - -1.0
1,108,434 - -2.9
1,108,488 - -2.1
1,108,997 - 14932 mRNA_6564 0.24 -0.5
1,109,054 + 14932 mRNA_6564 0.28 +0.1

Or see this region's nucleotide sequence