Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6591

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14958 and 14959 are separated by 604 nucleotides14959 and 14960 are separated by 356 nucleotides mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1,171,853 to 1,172,203 14958 mRNA_6591: 14959 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 1,172,808 to 1,176,820 14959 mRNA_6592: 14960 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,177,177 to 1,181,389 14960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,172,116 + 14958 mRNA_6590 0.75 +0.2
1,172,517 + -0.6
1,172,537 + -0.1
1,172,570 - +0.8
1,172,656 - +0.1
1,172,662 + +1.4
1,172,668 - -0.7
1,172,675 - -1.6
1,172,680 + +1.0
1,172,835 + -2.8
1,172,853 + -1.9
1,173,005 - -0.2
1,173,022 + -2.1
1,173,289 - 14959 mRNA_6591 0.12 -0.7
1,173,411 - 14959 mRNA_6591 0.15 -2.6
1,173,596 + 14959 mRNA_6591 0.20 -2.1
1,174,033 + 14959 mRNA_6591 0.31 +1.0
1,174,144 - 14959 mRNA_6591 0.33 +0.2
1,174,408 - 14959 mRNA_6591 0.40 -0.4
1,174,412 + 14959 mRNA_6591 0.40 -0.4
1,174,935 + 14959 mRNA_6591 0.53 -3.3
1,175,152 - 14959 mRNA_6591 0.58 -2.4
1,175,200 - 14959 mRNA_6591 0.60 -2.9
1,175,363 + 14959 mRNA_6591 0.64 -0.6
1,175,495 + 14959 mRNA_6591 0.67 -0.9
1,175,501 + 14959 mRNA_6591 0.67 -3.4
1,175,733 - 14959 mRNA_6591 0.73 -0.0
1,175,781 - 14959 mRNA_6591 0.74 -2.5
1,175,790 + 14959 mRNA_6591 0.74 -0.3
1,175,911 - 14959 mRNA_6591 0.77 -1.6
1,176,059 + 14959 mRNA_6591 0.81 -0.8
1,176,110 - 14959 mRNA_6591 0.82 -1.5
1,176,179 - 14959 mRNA_6591 0.84 -1.8
1,176,217 - 14959 mRNA_6591 0.85 -0.7
1,176,304 + 14959 mRNA_6591 0.87 +0.0
1,176,336 - 14959 mRNA_6591 0.88 -0.2
1,176,344 - 14959 mRNA_6591 0.88 -0.7
1,176,366 + 14959 mRNA_6591 0.89 -2.0
1,176,373 - 14959 mRNA_6591 0.89 -0.8
1,176,528 + -1.9
1,176,671 - -0.4
1,176,842 + -1.0
1,176,979 + -1.7
1,177,099 - -0.5
1,177,114 - +0.3
1,177,114 - -1.0
1,177,115 + +0.1
1,177,126 + -0.7
1,177,129 - -0.5
1,177,281 - -0.3
1,177,283 + +0.2
1,177,304 - -1.9
1,177,308 - -0.8
1,177,330 - +0.4
1,177,558 + -2.1
1,177,592 + -0.7

Or see this region's nucleotide sequence