Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6597

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14964 and 14965 are separated by 265 nucleotides14965 and 14966 are separated by 171 nucleotides mRNA_6596: 14964 - K02898 RP-L26e, RPL26 large subunit ribosomal protein L26e, at 1,188,722 to 1,189,902 14964 mRNA_6597: 14965 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 1,190,168 to 1,192,738 14965 mRNA_6598: 14966 - K11518 TOM40 mitochondrial import receptor subunit TOM40, at 1,192,910 to 1,194,373 14966

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,190,068 + -3.0
1,190,112 - -1.6
1,190,206 + -0.8
1,190,219 - -0.4
1,190,238 + -1.5
1,190,258 + -0.7
1,190,366 + -1.6
1,190,369 - -3.1
1,190,405 - -2.9
1,190,497 - 14965 mRNA_6597 0.13 -0.8
1,190,517 - 14965 mRNA_6597 0.14 -1.3
1,190,518 - 14965 mRNA_6597 0.14 -1.4
1,190,784 + 14965 mRNA_6597 0.24 -1.0
1,191,260 + 14965 mRNA_6597 0.42 -2.6
1,191,548 - 14965 mRNA_6597 0.54 -0.7
1,191,681 - 14965 mRNA_6597 0.59 -0.1
1,192,001 - 14965 mRNA_6597 0.71 -1.0
1,192,122 + 14965 mRNA_6597 0.76 -1.7
1,192,149 - 14965 mRNA_6597 0.77 -0.4
1,192,279 - 14965 mRNA_6597 0.82 -1.6
1,192,292 + 14965 mRNA_6597 0.83 -0.8
1,192,293 - 14965 mRNA_6597 0.83 -1.9
1,192,566 + -1.7
1,192,879 - -1.5
1,192,880 + -1.7

Or see this region's nucleotide sequence