Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6639

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15007 and 15008 are separated by 671 nucleotides mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815 15007 mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707 15008

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,316,874 - -0.9
1,316,921 - -2.2
1,317,067 - -1.4
1,317,080 + +0.4
1,317,145 + +0.1
1,317,149 + +0.0
1,317,150 - -0.4
1,317,153 + -0.8
1,317,155 + -1.6
1,317,160 + -1.3
1,317,184 + +0.2
1,317,212 - -0.9
1,317,215 - -2.0
1,317,225 - -2.2
1,317,226 - -1.4
1,317,434 - -0.5
1,317,508 + -0.7
1,317,517 - -0.8
1,317,530 + -2.6
1,317,533 - -0.1
1,317,535 + -0.1
1,317,543 + +0.7
1,317,674 + +1.2
1,317,685 - -2.0
1,317,694 + -0.9
1,317,792 - -2.1
1,318,351 + 15007 mRNA_6639 0.16 -1.0
1,318,426 - 15007 mRNA_6639 0.18 -1.5
1,318,568 - 15007 mRNA_6639 0.21 +0.1
1,318,709 - 15007 mRNA_6639 0.25 -3.8
1,318,817 + 15007 mRNA_6639 0.27 -2.2
1,319,020 + 15007 mRNA_6639 0.32 -2.8
1,319,130 - 15007 mRNA_6639 0.35 -2.2
1,319,134 + 15007 mRNA_6639 0.35 -0.7
1,319,521 - 15007 mRNA_6639 0.44 -0.5
1,319,724 + 15007 mRNA_6639 0.49 -3.9
1,320,024 - 15007 mRNA_6639 0.56 +0.6
1,320,166 - 15007 mRNA_6639 0.60 +1.8
1,320,303 - 15007 mRNA_6639 0.63 -2.2
1,320,309 + 15007 mRNA_6639 0.63 -2.0
1,320,321 + 15007 mRNA_6639 0.64 +0.1
1,320,339 - 15007 mRNA_6639 0.64 -0.7
1,320,637 + 15007 mRNA_6639 0.71 -0.5
1,320,711 - 15007 mRNA_6639 0.73 -0.7
1,320,724 + 15007 mRNA_6639 0.73 -3.5
1,321,020 - 15007 mRNA_6639 0.81 -1.5
1,321,062 + 15007 mRNA_6639 0.82 -1.5
1,321,145 + 15007 mRNA_6639 0.84 -2.6
1,321,145 - 15007 mRNA_6639 0.84 +1.1
1,321,515 + -1.3
1,321,765 + +0.0
1,322,117 - -1.8
1,322,488 - -1.1
1,322,543 - -1.0
1,322,657 + -0.8
1,322,658 - -1.2
1,322,782 - -1.0
1,322,797 + -1.7
1,322,814 + 15008 mRNA_6640 0.10 -2.9

Or see this region's nucleotide sequence